PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012427
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 228aa    MW: 24953.1 Da    PI: 7.4691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-78510PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-124395448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     W t E++ll++av+++G+ +W+++a +++        +g+t+ +c++r++ ++
        Sof012427 43 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarLGLTPHSCRLRFRHLR 95
                     9999*********************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00143997IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-54097IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-44294IPR009057Homeodomain-like
PfamPF002491.6E-94394IPR001005SANT/Myb domain
CDDcd001672.58E-44377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
XLRPHLHCLT GENAGRMADG SDGTDVSPES ETTAAAVKGG EIWGTLEELL LACAVTRHGT  60
ASWDSVAMEV QTRSPVAARL GLTPHSCRLR FRHLRRRFST VGSGGEEAEA EAEAEEDPDA  120
SAAEGWVDEL RRLRVAELRR DVERCDLSIG SLQAKVKRLK EERERERERE RNVSCEAKPD  180
EVSVNDRLSS PTRSPGGRAG KXNFTDLNPP KPPGTRAAAA GPKRKRLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.184700.0bud| inflorescence| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462574.12e-89hypothetical protein SORBIDRAFT_02g028460
TrEMBLC5X3Y22e-89C5X3Y2_SORBI; Putative uncharacterized protein Sb02g028460
STRINGSb02g028460.15e-89(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-10DNA-binding bromodomain-containing protein